FlyBase

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Flybase is a model organism database for the fruitfly Drosophila melanogaster. The additional genome sequencing of additional species has expanded the scope many more Drosophila species. See the website flybase.net for more information.

Misc Trivia

BioPerl contributors Chris Mungall, Suzi Lewis, and Mark Yandell all worked as part of Flybase, BDGP, or Celera which worked to provide annotation for the D. melanogaster genome[1].

References

  1. Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai Z, Lasko P, Lei Y, Levitsky AA, Li J, Li Z, Liang Y, Lin X, Liu X, Mattei B, McIntosh TC, McLeod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RD, Scheeler F, Shen H, Shue BC, Sidén-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, WoodageT, Worley KC, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang G, Zhao Q, Zheng L, Zheng XH, Zhong FN, Zhong W, Zhou X, Zhu S, Zhu X, Smith HO, Gibbs RA, Myers EW, Rubin GM, and Venter JC. The genome sequence of Drosophila melanogaster. Science. 2000 Mar 24;287(5461):2185-95. PubMed ID:10731132 | HubMed [dmelgenome]
  2. Grumbling G and Strelets V. FlyBase: anatomical data, images and queries. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D484-8. DOI:10.1093/nar/gkj068 | PubMed ID:16381917 | HubMed [flybase2006]
  3. Drysdale RA, Crosby MA, and FlyBase Consortium. FlyBase: genes and gene models. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D390-5. DOI:10.1093/nar/gki046 | PubMed ID:15608223 | HubMed [flybase2005]
  4. FlyBase Consortium. The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res. 2002 Jan 1;30(1):106-8. PubMed ID:11752267 | HubMed [flybase2002]
  5. FlyBase Consortium. The FlyBase database of the Drosophila Genome Projects and community literature. Nucleic Acids Res. 1999 Jan 1;27(1):85-8. PubMed ID:9847148 | HubMed [flybase99]
All Medline abstracts: PubMed | HubMed
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