MUMMER

Mummer is a tool for aligning whole genomes using a suffix-tree to quickly lookup identical words and build alignments.

To Do

There currently aren't any modules implemented to interact with this tool.

References

1. Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, and Salzberg SL. Versatile and open software for comparing large genomes. Genome Biol. 2004;5(2):R12. DOI:10.1186/gb-2004-5-2-r12 |
2. Delcher AL, Phillippy A, Carlton J, and Salzberg SL. Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res. 2002 Jun 1;30(11):2478-83.