Network 0 1.5.2 delta

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These are detailed notes on changes made between the first version and bioperl-network-release-1-5-2.

Bio::Network::Edge
Add all files
Bio::Network::IO
Add all files
Rename
Bio::Network::IO::dip_tab
Add all files
Bio::Network::IO::psi
Rename
Fix for Bio::Species changes
Note on PSI file names
Allow a node to use a DIP id as an accession
Remove debugging
Add more database name synonyms - this is not good
Use common name as species name if field fullName is missing
Bio::Root::Root, not Bio::Root::Object
Bio::Network::IO::psi::intact
Email changed
Bio::Network::IO::psi_xml
Add all files
Rename
Bio::Network::Interaction
Add all files
Bio::Network::Node
Add all files
Bio::Network::ProteinNet
Add all files
Add interactions()
Rename
Add required version number
Version .80 of Graph, or greater
Add to Requirements
Build.PL
New Build.PL install system, Makefile.PL still works but warns
Makefile.PL
Add all files
Rename
Add version number, correct text
WriteMakefile now uses info from %packages in PREREQ_PM and displays warnings during "perl Makefile.PL" if min version numbers of prereqs are not met
Check Bioperl is installed before proceeding with makefile
Better test for existing Bioperl installation
Now uses info from %packages to populate PREREQ_PM in WriteMakefile
New-style with clearer version checking
Good style for ¬$VERSION
Do not die, just warn when required things are missing
Some modules don't define VERSION, default to 0
New Build.PL install system, Makefile.PL still works but warns
ModuleBuildBioperl.pm
New Build.PL install system, Makefile.PL still works but warns
Update fix from core
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