RAP

Phylogenetic Tree Reconciler (Réconciliateur d'Arbres Phylogénétiques) [1] is gene tree/species tree reconcilation program.

Currently there are no interfaces to this in BioPerl

References

1. Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, and Perrière G. Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. Bioinformatics. 2005 Jun 1;21(11):2596-603. DOI:10.1093/bioinformatics/bti325 |