Unimplemented methods in BioPerl
These are a collection of modules which contain unimplemented methods. These do not include interface classes (as described in Advanced BioPerl), but are modules which haven't implemented methods described in an interface.
Total unimplemented methods: 25
- Modules haven't implemented all write() methods. Bio::Restriction::IO::base
write()is only partially implemented (i.e. doesn't recognize multisite/multicut enzymes).
- Bio::Restriction::IO::bairoch format works somewhat, but does not work for multisite/multicut enzymes.
- Bio::Restriction::IO inherits from Bio::SeqIO for some unknown reason at the moment (maybe as a quick way to access methods).
The following modules currently do not have
write_aln() methods implemented. Note also that a few of these also do not completely parse data in the file, such as meta data. A notable exception is Stockholm multiple alignment format, which now has implemented a write_aln() method and parses annotation and meta data.